Index

B

build_fine_transition_matrix() (in module mr_toolkit.coarse_graining.msm_coarse_graining)

build_occupancy() (in module mr_toolkit.coarse_graining.msm_coarse_graining)

C

coarse_grain() (in module mr_toolkit.coarse_graining.msm_coarse_graining)

compute_avg_bin_weights() (in module mr_toolkit.coarse_graining.msm_coarse_graining) compute_reweighted_stationary() (in module mr_toolkit.reweighting.analysis)

F

fit() (mr_toolkit.clustering.StratifiedClusters method)

G

get_comm() (in module mr_toolkit.coarse_graining.msm_coarse_graining) get_equil() (in module mr_toolkit.coarse_graining.msm_coarse_graining) get_hill_mfpt() (in module mr_toolkit.coarse_graining.msm_coarse_graining)

get_kl() (in module mr_toolkit.reweighting.analysis) get_naive_hill_mfpt() (in module mr_toolkit.coarse_graining.msm_coarse_graining) get_receiving_distribution() (in module mr_toolkit.reweighting.splicing) get_set_kls() (in module mr_toolkit.reweighting.analysis)

I

iterative_trajectory_splicing() (in module mr_toolkit.reweighting.splicing)

M

module mr_toolkit.clustering mr_toolkit.coarse_graining.msm_coarse_graining, [1], [2] mr_toolkit.reweighting.analysis mr_toolkit.reweighting.splicing mr_toolkit.clustering module

mr_toolkit.coarse_graining.msm_coarse_graining module, [1], [2] mr_toolkit.reweighting.analysis module mr_toolkit.reweighting.splicing module

P

predict() (mr_toolkit.clustering.StratifiedClusters method)

R

remove_state() (mr_toolkit.clustering.StratifiedClusters method)

S

splice_trajectories() (in module mr_toolkit.reweighting.splicing)

splice_trajectory() (in module mr_toolkit.reweighting.splicing) StratifiedClusters (class in mr_toolkit.clustering)